These are modular web-based presentations built using Reveal.js.

Scientific writing: clarity, conciseness, and cohesion

Presentation highlighting common issues with scientific writing and how to solve them.

Single-cell epigenomics

Intro and literature review of challenges and approaches to single-cell epigenomics analysis. Presentation for the 2017 American Foundation for AIDS Research Think Tank Meeting.

Epigenomics tools: ATAC and Bisulfite

Overview of epigenomics; basics and applications of ATAC-seq and Bisulfite-seq.

Research overview

Brief introduction to research in the group


Epigenomics and cancer heterogeneity in Ewing sarcoma

Exploring DNA methylation data in a rare pediatric cancer.


Using Docker Bioconductor containers for portable, sharable, and reproducible R analysis and package development

2015 European Bioconductor Developers Meeting, Cambridge, UK.

A guide to building, using, modifying, and sharing R environments based on Bioconductor Docker containers


Pypiper and Looper tutorial

A quick overview of the basic and advanced features of our python-based pipeline workflow system. Pypiper is a user-friendly large-data informatics pipeline framework. Looper is a project manager that distributes jobs across a cluster for you.