These are modular web-based presentations built using Reveal.js.


Tools for epigenome analysis of genomic regions and data-intensive project management 2017 November.
A presentation of tools we have developed: LOLA, MIRA, and the PEP ecosystem.

Scientific writing: conciseness, clarity, and cohesion 2017 July.
Presentation highlighting common issues with scientific writing and how to solve them.

Single cell epigenomics 2017 April.
Intro and literature review of challenges and approaches to single-cell epigenomics analysis. Presentation for the 2017 American Foundation for AIDS Research Think Tank Meeting.

Epigenome tools: ATAC-seq and Bisulfite-seq 2017 March.
Overview of epigenomics; basics and applications of ATAC-seq and Bisulfite-seq.

Sheffield lab intro 2017 February.
Brief introduction to research in the group

Epigenomics and cancer heterogeneity in Ewing sarcoma 2017 February.
Exploring DNA methylation data in a rare pediatric cancer.

Bioinformatics pipeline development and deploy with Pypiper and Looper 2016 March.
A quick overview of the basic and advanced features of our python-based pipeline workflow system. Pypiper is a user-friendly large-data informatics pipeline framework. Looper is a project manager that distributes jobs across a cluster for you.

Using Docker Bioconductor containers 2015 December.
2015 European Bioconductor Developers Meeting, Cambridge, UK. A guide to building, using, modifying, and sharing R environments based on Bioconductor Docker containers